This study investigates the cluster approach to optimize strategies for agricultural enterprises in Ukraine, emphasizing geographical proximity as a key factor in cluster formation. The research applies Kohonen Self-Organizing Maps (SOMs) and Ward’s hierarchical clustering to classify enterprises based on storage capabilities, transport logistics, crop yields, and military risk exposure. By analyzing these factors, this study identifies distinct patterns of innovation adoption, strategic management, and economic resilience among the clusters. The findings highlight variations in competitiveness and resource efficiency, providing a detailed understanding of regional economic performance. Unlike previous research, this study offers a novel integration of conflict-related risks into the clustering methodology, revealing new insights into how military factors influence cluster dynamics. Comprehensive maps and diagrams illustrate the spatial and economic distribution of clusters, aiding in visual interpretation. The results propose strategic measures tailored to enhance agricultural productivity and competitiveness, particularly in Ukraine’s current military context. This approach offers a more adaptive framework for managing agricultural enterprises, promoting resilience and long-term sustainability in global markets.